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Hi OME team,
Our over-zealous computer security folks scanned the OMERO server I run (version 5.6.12) and found an old and insecure version (v. 1.2.17) of log4j.jar in both the server and client locations in the installation. The paths are:
/opt/omero/server/OMERO.server-5.6.12-ice36/lib/server/log4j.jar
/opt/omero/server/OMERO.server-5.6.12-ice36/lib/client/log4j.jar
Looking back at the security assessment ( CVE-2021-44228 ("Log4Shell") Assessment | Open Microscopy Environment (OME) ) you guys did in 2021, it appears that there shouldn’t be a log4j package in omero at all. Did something sneak in accidently in the 5.6.12 build? The 5.6.11 build appears not to have them. If so, can I simply delete those log4j.jar files?
Thanks for a rapid response, Damir

Based on the assessment performed in the issue above and discussions with @dominikl , @will-moore and @dgault the root cause has been identified. Users are safe to delete the following JARs from their 5.6.12 distributions:

lib/server/byte-buddy-agent.jar
lib/server/byte-buddy.jar
lib/server/jcommander.jar
lib/server/log4j.jar
lib/server/mockito-core.jar
lib/server/mockito-inline.jar
lib/server/slf4j-jdk14.jar
lib/server/slf4j-log4j12.jar
lib/server/testng.jar
lib/client/byte-buddy-agent.jar
lib/client/byte-buddy.jar
lib/client/jcommander.jar
lib/client/log4j.jar
lib/client/mockito-core.jar
lib/client/mockito-inline.jar
lib/client/slf4j-jdk14.jar
lib/client/slf4j-log4j12.jar
lib/client/testng.jar

The OME team is light on staff at the moment with summer holidays in full swing but next week should be able to decide whether to release 5.6.13 with builds based on the reversion to Ivy 2.4.0:

  • Revert "Upgrade Ivy to 2.5.2" (Fixes #6405) by chris-allan · Pull Request #6406 · ome/openmicroscopy · GitHub
  • Or to pursue changes to restore 2.4.0 like functionality with Ivy 2.5.2. Such a release is unlikely to contain any changes beyond a resolution of this build regression.

    Hi All,

    We just released OMERO.5.6.13 which reverts the build issues discussed above: See Release of OMERO.server 5.6.13

    Thanks for the report @dsudar,

    Regards,