Hi guys,
I have trouble installing root_numpy and root_pandas, I want to use an analysis about LHCb open data and I need this two packages to work with it.
the error message when I run the command pip install --user root_numpy is
Collecting root_numpy
Using cached root_numpy-4.8.0.tar.gz (520 kB)
Preparing metadata (setup.py) ... done
Building wheels for collected packages: root_numpy
Building wheel for root_numpy (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [347 lines of output]
In file included from /home/commodo98/.local/lib/python3.10/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
from /home/commodo98/.local/lib/python3.10/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/commodo98/.local/lib/python3.10/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from root_numpy/tmva/src/_libtmvanumpy.cpp:581:
/home/commodo98/.local/lib/python3.10/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
root_numpy/tmva/src/evaluate.pyx: In function ‘PyObject* __pyx_f_13_libtmvanumpy_evaluate_twoclass(TMVA::MethodBase*, PyArrayObject*, double)’:
root_numpy/tmva/src/evaluate.pyx:59:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
59 | _method.fTmpEvent = event
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
root_numpy/tmva/src/evaluate.pyx:69:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
69 | _method.fTmpEvent = NULL
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
root_numpy/tmva/src/evaluate.pyx: In function ‘PyObject* __pyx_f_13_libtmvanumpy_evaluate_multiclass(TMVA::MethodBase*, PyArrayObject*, unsigned int)’:
root_numpy/tmva/src/evaluate.pyx:82:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
82 | _method.fTmpEvent = event
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
root_numpy/tmva/src/evaluate.pyx:88:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
88 | _method.fTmpEvent = NULL
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
root_numpy/tmva/src/evaluate.pyx: In function ‘PyObject* __pyx_f_13_libtmvanumpy_evaluate_regression(TMVA::MethodBase*, PyArrayObject*, unsigned int)’:
root_numpy/tmva/src/evaluate.pyx:101:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
101 | _method.fTmpEvent = event
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
root_numpy/tmva/src/evaluate.pyx:107:20: error: ‘const TMVA::Event* TMVA::MethodBase::fTmpEvent’ is protected within this context
107 | _method.fTmpEvent = NULL
| ^~~~~~~~~
In file included from root_numpy/tmva/src/_libtmvanumpy.cpp:598:
/home/commodo98/root/builddir/include/TMVA/MethodBase.h:445:28: note: declared protected here
445 | mutable const Event *fTmpEvent; //! temporary event when testing on a different DataSet than the own one
| ^~~~~~~~~
In file included from /usr/include/python3.10/unicodeobject.h:1046,
from /usr/include/python3.10/Python.h:83,
from root_numpy/tmva/src/_libtmvanumpy.cpp:4:
cython_utility: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’:
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
261 | PyUnicode_WSTR_LENGTH(op) : \
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:137:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations]
262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
cython_utility:137:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
264 | PyUnicode_WSTR_LENGTH(op)))
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:137:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
261 | PyUnicode_WSTR_LENGTH(op) : \
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:137:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations]
262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
cython_utility:137:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
264 | PyUnicode_WSTR_LENGTH(op)))
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:137:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
261 | PyUnicode_WSTR_LENGTH(op) : \
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:153:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations]
262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
cython_utility:153:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
264 | PyUnicode_WSTR_LENGTH(op)))
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:153:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
261 | PyUnicode_WSTR_LENGTH(op) : \
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:153:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations]
262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
cython_utility:153:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations]
451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’
264 | PyUnicode_WSTR_LENGTH(op)))
| ^~~~~~~~~~~~~~~~~~~~~
cython_utility:153:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’
/usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> root_numpy
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
A lot of message between the outputs I have reported here.
Thank you in advance
posting code_
ROOT Version: ROOT 6.26/10
Platform: Ubuntu 22.04.1 LTS
Compiler: Not Provided
Hi @Adrianodelvincio!
Sorry, we can’t help here. The root_numpy
and root_pandas
packages are not part of ROOT, and they are both deprecated and unmaintained:
GitHub - scikit-hep/root_numpy: The interface between ROOT and NumPy
GitHub - scikit-hep/root_pandas: A Python module for conveniently loading/saving ROOT files as pandas DataFrames
Please don’t use them, it’s probably very difficult to get them to compile now.
If you want to get NumPy arrays out of ROOT files, you should better use directly. You can open the files with RDataFrame and then use AsNumpy() to get your arrays. Alternatively, you can also do your analysis completely in RDataFrame to begin with, or if you don’t want to use ROOT you can install the uproot python package that succeeded root_numpy
.