ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full comm

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Already on GitHub? Sign in to your account ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. eponraj27392 opened this issue Aug 20, 2019 · 11 comments

I have been using google colab . I would like to work with Hidden markov, so I would like to install a library called hmms On installing pip install hmms , i received the following error.

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

I also try to install the same library in Pycharm IDE , I received the same error with some call backs.

Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\

Collecting hmms
  Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
        c_options = CompilationOptions(**options)
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
        raise ValueError(message)
    ValueError: got unknown compilation option, please remove: include_dirs
What does it means and how can i rectify this issue ? kindly suggest some solution to get working
I have been using google colab. I would like to work with Hidden markov, so I would like to install a library called hmms On installing pip install hmms, i received the following error.
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
I also try to install the same library in Pycharm IDE, I received the same error with some call backs.
Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\
Collecting hmms
  Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
        c_options = CompilationOptions(**options)
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
        raise ValueError(message)
    ValueError: got unknown compilation option, please remove: include_dirs
What does it means and how can i rectify this issue ? kindly suggest some solution to get working
Hey, did you find any solution to this problem?
Regards / Yours sincerely

---------------------------------------------------------------
Esakkiponraj Esakkimuthu
e-Mail:   [email protected]
---------------------------------------------------------------
*$$$ The race has not yet over bcoz I haven't won yet** $$$*
On Tue, Sep 24, 2019 at 11:27 PM Mohammed Danish Khan < ***@***.***> wrote:
 I have been using google colab. I would like to work with Hidden markov,
 so I would like to install a library called hmms On installing pip
 install hmms, i received the following error.
 ERROR: Command errored out with exit status 1: python setup.py egg_info
 Check the logs for full command output.
 I also try to install the same library in Pycharm IDE, I received the
 same error with some call backs.
 Command "python setup.py egg_info" failed with error code 1 in
 C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\
 Collecting hmms
   Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
     Complete output from command python setup.py egg_info:
     Traceback (most recent call last):
       File "<string>", line 1, in <module>
       File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
         ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
       File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
         c_options = CompilationOptions(**options)
       File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
         raise ValueError(message)
     ValueError: got unknown compilation option, please remove: include_dirs
 What does it means and how can i rectify this issue ? kindly suggest some solution to get working
 Hey, did you find any solution to this problem?
 You are receiving this because you authored the thread.
 Reply to this email directly, view it on GitHub
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          I too had the same problem of implementing HMM in my thesis.
I found some solutions given by Lazy programmer tutorial for Hidden Markov
model solves my problem.
But he develop the HMM model from the scratch using some DL frameworks..
Better you can go with that option, since hmms and hmmlearn library doesn't
support continuous data.
Regards / Yours sincerely
---------------------------------------------------------------
Esakkiponraj Esakkimuthu
e-Mail:   [email protected]
---------------------------------------------------------------
*$$$ The race has not yet over bcoz I haven't won yet** $$$*
On Mon, Dec 2, 2019 at 8:54 PM shahab-anjum ***@***.***> wrote:
 i need hmm in my thesis so if u?
 You are receiving this because you authored the thread.
 Reply to this email directly, view it on GitHub
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          You install the library  hmms from github; and the problem will be solved

The command is :

!python -m pip install git+https://github.com/lopatovsky/HMM

Duplicate of #s#egg=HMMs
          Hello! I'm trying to install another github package:
https://github.com/ismrmrd/ismrmrd-python
After trying to install it with the !pip install command, I get the following error:
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Can someone hel me further?