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Already on GitHub? Sign in to your account needs investigation Collect and attach more details (build flags, stacktraces, input dumps, etc) platform: arm ARM boards related issues: RPi, NVIDIA TK/TX, etc

Problem is caused by this optional flag: -DWITH_OPENMP=ON
Comment with workaround : #14884 (comment)
Comment with investigation : #14884 (comment)

Original description

I am compiling opencv from source in order to enable multi-core support on a aarch64 platform.

I am building open cv with the following config:

cmake -D CMAKE_BUILD_TYPE=RELEASE -DBUILD_SHARED_LIBS=OFF -DBUILD_EXAMPLES=OFF -DBUILD_opencv_apps=OFF -DBUILD_DOCS=OFF -DBUILD_PERF_TESTS=OFF -DBUILD_TESTS=OFF -DCMAKE_INSTALL_PREFIX=/usr/local -DENABLE_PRECOMPILED_HEADERS=OFF -DWITH_LIBV4L=ON -DWITH_QT=ON -DWITH_OPENGL=ON -DFORCE_VTK=ON -DWITH_TBB=ON -DWITH_GDAL=ON -DWITH_XINE=ON -DWITH_OPENMP=ON -DWITH_GSTREAMER=ON -DWITH_OPENCL=ON -DOPENCV_EXTRA_MODULES_PATH=../../opencv_contrib/modules ../

but every time I import it using python, I get the following error. A lot of the results on-line seems to be very vague and/or point towards a bug in gcc 4.2 fixed in 4.3 and I am currently on 8.x provided by debian repo and also 9.0.1 built from upstream source:

root@linaro-developer:~# python3
Python 3.7.3 (default, Apr  3 2019, 05:39:12) 
[GCC 8.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import cv2
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/lib/python3.7/dist-packages/cv2/__init__.py", line 89, in <module>
    bootstrap()
  File "/usr/local/lib/python3.7/dist-packages/cv2/__init__.py", line 79, in bootstrap
    import cv2
ImportError: /usr/lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory in static TLS block

This is on opencv master branch as well as 4.0.1

AlexGechis, AhmedHisham1, alexis-gruet-deel, haiyang-tju, tlhcelik, ayadav10491, Kobzol, Kaju-Bubanja, igorbeduin, charlescambier, and 79 more reacted with thumbs up emoji Aspirinkb, cvramanan, and Maxfashko reacted with thumbs down emoji eloqven, Teresito, schvarcz, Arlenefu, MarcoAtefCosman, sebastienvg, craston, mayukhberkeley, cloudlakecho, 980468094, and 6 more reacted with hooray emoji AlexGechis, alexis-gruet-deel, haiyang-tju, ayadav10491, cmehrshad, Kaju-Bubanja, igorbeduin, fjp, eloqven, Teresito, and 17 more reacted with heart emoji All reactions

I had a similar issue where I could import cv2 in consol but not in a script. I was importing tensorflow before cv2. For some reason switching the order (importing cv2 first) worked. Not sure why - but if it helps someone else 👍

@matallan

I had the same problem on Nvidia Jetson Nano device.
Switching the import order has worked for me too.
Seems to be a problem with the embedded device itself. Perhaps because I'm not running it on the 10W power mode.

rallen10, bentwookie, nalzok, Ajithbalakrishnan, BLACK-CAT13, gerald-ftk, MareSeestern, and TunyTrinh reacted with thumbs up emoji cloudlakecho and BLACK-CAT13 reacted with hooray emoji All reactions

I had a similar issue where I could import cv2 in consol but not in a script. I was importing tensorflow before cv2. For some reason switching the order (importing cv2 first) worked. Not sure why - but if it helps someone else 👍

it's working to me. Thanks

I had a similar issue where I could import cv2 in consol but not in a script. I was importing tensorflow before cv2. For some reason switching the order (importing cv2 first) worked. Not sure why - but if it helps someone else 👍

no idea why, fixed it for me too

dmarcelino, AashinShazar, prashass, sskorol, pierrextardif, nimeshgit, tatsuki-ichijo, h13-0, GDWR, alalek, and 45 more reacted with thumbs up emoji mabuyun, ShivangiMisra12, athnzc, CHENyuuuuuuu, yihuai-gao, and taylorwood reacted with heart emoji All reactions ImportError: /usr/lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory in static TLS block theAIGuysCode/yolov4-deepsort#43

I had a similar issue where I could import cv2 in consol but not in a script. I was importing tensorflow before cv2. For some reason switching the order (importing cv2 first) worked. Not sure why - but if it helps someone else

It is working to me. Thank you

Most likely cause here

That is a bug in whatever dlopened libgomp.so.1 and before doing that ate all the preallocated TLS area.
The GNU TLS2 model which I'm afraid aarch64 uses unfortunately eats from the same TLS preallocated pool as libraries that require static TLS like libgomp, where it is performance critical to have it as static TLS.
Either don't dlopen libgomp, or LD_PRELOAD it, link it with the application that dlopens it, cut down the uses of other TLS or dlopen libgomp earlier.
There is nothing that can be done on the gcc side.

Three possible solutions:

Disable the use of OpenMP during installation of OpenCV. Place the arguments -DBUILD_OPENMP=OFF -DWITH_OPENMP=OFF in your CMAKE command line. OpenCV will now use pthread. Performance losses are hardly noticeable. (Of course, only possible if you install OpenCV from scratch and not by pip or sudo apt install)

Use TBB as parallel framework. sudo apt-get install libtbb2 libtbb-dev loads the needed libraries.
-DBUILD_TBB=ON -DWITH_TBB=ON in your CMAKE command. TBB overrules OpenMP.
(Again, only possible if you install OpenCV from scratch)

As stated above, make sure another application uses libgomp before OpenCV. This can be the import of TensorFlow, or the LD_PRELOAD construction.

alalek, Qengineering, xlla, vchigrin, ChulanZhang, tau233, NaleRaphael, robin15, gst, and sihaixianyu reacted with thumbs up emoji fei4xu reacted with heart emoji All reactions CV2 installed, but when i Import cv2 on spyder it gives me this error : import cv2 ImportError: /usr/lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory in static TLS block opencv/opencv-python#466

Hello,

No solution abve work for me... In jupyter I got the same error while importing CV2 and it works under python shell.

I try to import tensorflwo first, try to preload the library...

Do you have another solution please ?? Thanks

Hello,

No solution abve work for me... In jupyter I got the same error while importing CV2 and it works under python shell.

I try to import tensorflwo first, try to preload the library...

Do you have another solution please ?? Thanks

I have the same issues as you , export LD_PRELOAD=/usr/lib/aarch64-linux-gnu/libgomp.so.1 dosen't work in Jupyter , it is so werid .

Hi @AlexandreBourrieau @yipenglinoe,
If you are using Jupyter Lab, you may want to add the following in your jupyter_lab_config.py.

import os
c = get_config()
os.environ['LD_PRELOAD'] = '/usr/lib/aarch64-linux-gnu/libgomp.so.1'
c.Spawner.env.update('LD_PRELOAD')
  • As stated above, make sure another application uses libgomp before OpenCV. This can be the import of TensorFlow, or the LD_PRELOAD construction.
  • in my case, it is:

     export LD_PRELOAD=/home/f/.local/lib/python3.6/site-packages/sklearn/__check_build/../../scikit_learn.libs/libgomp-d22c30c5.so.1.0.0

    I find the full path according to the error message like this:

    ImportError: /home/f/.local/lib/python3.6/site-packages/sklearn/__check_build/../../scikit_learn.libs/libgomp-d22c30c5.so.1.0.0: cannot allocate memory in static TLS block

    Ran into this recently, and since I really don't like the messy "change import order" approach, nor do I want to rely on preloads in my environment, I used a more explicit approach:

    if platform.system() == "Linux":
         # Force libgomp to be loaded before other libraries consuming dynamic TLS (to avoid running out of STATIC_TLS)
         ctypes.cdll.LoadLibrary("libgomp.so.1")
              

    I experienced this issue, and tried the above solutions. However on closer inspection, I saw that the library causing the issue was using its own bundled version of libgomp, not the system one.

    I.e.:

    Error message(s): ['/usr/local/lib/python3.6/dist-packages/xgboost/lib/../../xgboost.libs/libgomp-d22c30c5.so.1.0.0: cannot allocate memory in static TLS block']
    

    Therefore when running the export LD_PRELOAD solution, I had to set the path to that bundled library, not my system one.

    Importing scikit-learn related library first before importing any other libraries like opencv fixed the issue for me.
    For example, albumentations include the scikit learn imports, so I imported that first before importing opencv.

    from albumentations import Resize, Compose
    from albumentations.pytorch.transforms import  ToTensor
    from albumentations.augmentations.transforms import Normalize
    import cv2

    I have experienced this problem on systems that have OpenMP as a prerequisite that are built with cuda/NVPTX extensions such as LLVM.

    importing cv2 first then scikit-learn results in:
    ImportError: /opt/venv/lib/python3.10/site-packages/sklearn/__check_build/../../scikit_learn.libs/libgomp-d22c30c5.so.1.0.0
    importing scikit-learn then cv2 results in:
    ImportError: /lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory in static TLS block.

    Being that these two libraries are interchangeable this issue can be resolved by using a static link:

    cd /lib/pythonXXX/site-packages/scikit-learn.libs/
    mv libgomp-d22c30c5.so.1.0.0 libgomp-d22c30c5.so.1.0.0_bak
    ln -s /usr/lib/-linux-gnu/libgomp.so.1 libgomp-d22c30c5.so.1.0.0

    1. Disable the use of OpenMP during installation of OpenCV. Place the arguments -DBUILD_OPENMP=OFF -DWITH_OPENMP=OFF in your CMAKE command line. OpenCV will now use pthread. Performance losses are hardly noticeable. (Of course, only possible if you install OpenCV from scratch and not by pip or sudo apt install)

    2. Use TBB as parallel framework. sudo apt-get install libtbb2 libtbb-dev loads the needed libraries.
    -DBUILD_TBB=ON -DWITH_TBB=ON in your CMAKE command. TBB overrules OpenMP.
    (Again, only possible if you install OpenCV from scratch)

    fwiw, I tried this solution (1, 2, or 1+2), but I still get :

        import cv2
    E   ImportError: /lib/aarch64-linux-gnu/libGLdispatch.so.0: cannot allocate memory in static TLS block
    

    I have well Parallel framework: TBB (ver 2020.2 interface 11102) though thus.

    it's with Jetson NX JP5.1 / ubuntu 20.04 / python3.8 / opencv 4.7.0 for any info.

    doing:

    ctypes.cdll.LoadLibrary(_GL_DISPATCH_PATH)
    

    before import of cv2 (or in its __init__.py (or related) given I build the wheel I'm using too (from the same custom build than the shared binary libs themselves of opencv)), work-around correctly the issue though still.

    There is an issue with glibc on Linux arm64 that causes dlopen errors when certain Python libraries
    are loaded in the "wrong" order. This seems to happen when some packages, such as scikit-learn,
    bundle their own copy of the libgomp library, but others do not. When this happens, the package
    import order matters, as noted in the following GitHub Issue threads:
    - opencv/opencv#14884
    - keras-team/keras-tuner#317
    The problematic libraries appear to be scikit-learn and Tensorflow, and the workaround is to make
    sure that `import sklearn` comes before `import tensorflow`. To this end, this commit updates the
    Python scripts for the Tensorflow examples to import scikit-learn early on, which ensures that the
    import order is correct.
    BUG: import acoular fails with cannot allocate memory in static TLS block on resource constrained device (Google Coral TPU) acoular/acoular#274 needs investigation Collect and attach more details (build flags, stacktraces, input dumps, etc) platform: arm ARM boards related issues: RPi, NVIDIA TK/TX, etc