Installation
Please refer to the suite2p
README
for the latest up-to-date installation instructions.
Common issues
If when running
suite2p
, you receive the error:
No
module
named
PyQt5.sip
, then try uninstalling and reinstalling pyqt5
pip uninstall pyqt5 pyqt5-tools
pip install suite2p
If when running suite2p, you receive an error associated
with matplotlib, try upgrading it:
pip install matplotlib --upgrade
If you are on Yosemite Mac OS, PyQt doesn’t work, and you won’t be able to install suite2p. More recent versions of Mac OS are fine.
If you are using Ubuntu 22.04 and run into the following issue:
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in even though it was found.
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application
may fix this problem.
Follow this link to install Qt5 and the issue above should be fixed.
The software has been heavily tested on Windows 10 and Ubuntu 18.04, and
less well tested on Mac OS. Please post an issue if you have
installation problems. The registration step runs faster on Ubuntu than
Windows, so if you have a choice we recommend using the Ubuntu OS.
Dependencies
rastermap
pyqtgraph
PyQt5
numpy (>=1.13.0)
scipy
scikit-learn
scanimage-tiff-reader
tifffile
natsort
matplotlib (not for plotting (only using hsv_to_rgb and colormap
function), should not conflict with PyQt5)
